THOC5
Homolog podjedinice 5 THO kompleksa jest protein koji je kod ljudi kodiran genom THOC5 sa hromosoma 22. THOCs je član THO kompleksa koji je potkompleks kompleksa za transkripciju/eksport (TREX).
THOC5 je evolucijski konzerviran kod viših eukariota, ali tačne uloge THOC5 u transkripciji i ieksportu iRNK još uvijek nisu jasne. THOC5 je fosforiliziran pomoću nekoliko protein-kinaza na više ostataka nakon vanćelijskog stimulusa. To uključuje stimulaciju faktorima rasta/citokinima/hemokinima ili reagensima za oštećenje DNK. Nadalje, THOC5 je supstrat za nekoliko onkogenih tirozin-kinaza, što sugerira da THOC5 može biti uključen u razvoj raka.
Aminokiselinska sekvenca[uredi | uredi izvor]
Dužina polipeptidnog lanca je 683 aminokiseline, a molekulska težina 78.508 Da.
| 10 | 20 | 30 | 40 | 50 | ||||
|---|---|---|---|---|---|---|---|---|
| MSSESSKKRK | PKVIRSDGAP | AEGKRNRSDT | EQEGKYYSEE | AEVDLRDPGR | ||||
| DYELYKYTCQ | ELQRLMAEIQ | DLKSRGGKDV | AIEIEERRIQ | SCVHFMTLKK | ||||
| LNRLAHIRLK | KGRDQTHEAK | QKVDAYHLQL | QNLLYEVMHL | QKEITKCLEF | ||||
| KSKHEEIDLV | SLEEFYKEAP | PDISKAEVTM | GDPHQQTLAR | LDWELEQRKR | ||||
| LAEKYRECLS | NKEKILKEIE | VKKEYLSSLQ | PRLNSIMQAS | LPVQEYLFMP | ||||
| FDQAHKQYET | ARHLPPPLYV | LFVQATAYGQ | ACDKTLSVAI | EGSVDEAKAL | ||||
| FKPPEDSQDD | ESDSDAEEEQ | TTKRRRPTLG | VQLDDKRKEM | LKRHPLSVML | ||||
| DLKCKDDSVL | HLTFYYLMNL | NIMTVKAKVT | TAMELITPIS | AGDLLSPDSV | ||||
| LSCLYPGDHG | KKTPNPANQY | QFDKVGILTL | SDYVLELGHP | YLWVQKLGGL | ||||
| HFPKEQPQQT | VIADHSLSAS | HMETTMKLLK | TRVQSRLALH | KQFASLEHGI | ||||
| VPVTSDCQYL | FPAKVVSRLV | KWVTVAHEDY | MELHFTKDIV | DAGLAGDTNL | ||||
| YYMALIERGT | AKLQAAVVLN | PGYSSIPPVF | QLCLNWKGEK | TNSNDDNIRA | ||||
| MEGEVNVCYK | ELCGPWPSHQ | LLTNQLQRLC | VLLDVYLETE | SHDDSVEGPK | ||||
| EFPQEKMCLR | LFRGPSRMKP | FKYNHPQGFF | SHR |
Funkcija[uredi | uredi izvor]
Nedavni podaci o THOC5 nokaut-miševima otkrivaju da je THOC5 bitan element u održavanju matičnih ćelija i faktor rasta/citokinom posredovane diferencijacije/ proliferacije. Nadalje, iscrpljivanje THOC5 utiče na manje od 1% ukupnog eksporta iRNK u stabilnom stanju, ali utiče na više od 90% gena indukovanih faktorom rasta/citokinom. THOC5, na taj način doprinosi 3′ obradi i/ili eksportu neposredno ranih gena induciranih vanćelijskim stimulansima. Ove studije donose novi uvid u vezu između kompleksa za eksport iRNK i neposrednog ranog genskog odgovora.
Podaci iz ovih studija takođe sugerišu da THOC5 može biti koristan alat za proučavanje biologije matičnih ćelija, za modifikaciju procesa diferencijacije i za terapiju raka.[5][6][7][8][9][10][11][12][13][14][15][16][17][18][19][20][21][22]
Reference[uredi | uredi izvor]
- ^ a b c GRCh38: Ensembl release 89: ENSG00000100296 - Ensembl, maj 2017
- ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000034274 - Ensembl, maj 2017
- ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ Tran DDH, Koch A and Tamura T. THOC5, a member of the mRNA export complex: a novel link between mRNA export machinery and signal transduction pathways in cell proliferation and differentiation. Cell Communication and Signaling 2014, 12:3
- ^ Tran DD, Saran S, Dittrich-Breiholz O, Williamson AJ, Klebba-Farber S, Koch A, Kracht M, Whetton AD, Tamura T (2013) Transcriptional regulation of immediate-early gene response by THOC5, a member of mRNA export complex, contributes to the M-CSF-induced macrophage differentiation. Cell death & disease 4: e879
- ^ Saran S, Tran DD, Klebba-Farber S, Moran-Losada P, Wiehlmann L, Koch A, Chopra H, Pabst O, Hoffmann A, Klopfleisch R, Tamura T (2013) THOC5, a member of the mRNA export complex, contributes to processing of a subset of wingless/integrated (Wnt) target mRNAs and integrity of the gut epithelial barrier. BMC Cell Biol 14: 51
- ^ Griaud, F., Pierce, A., Gonzalez Sanchez, M.B., Scott, M., Abraham, S.A., Holyoake, T.L., Tran, D.D., Tamura, T., and Whetton, A.D. (2013). A pathway from leukemogenic oncogenes and stem cell chemokines to RNA processing via THOC5. Leukemia 27, 932-940.
- ^ Katahira J, Okuzaki D, Inoue H, Yoneda Y, Maehara K, Ohkawa Y (2013) Human TREX component Thoc5 affects alternative polyadenylation site choice by recruiting mammalian cleavage factor I. Nucleic Acids Research 41: 7060-7072
- ^ Katahira J, Inoue H, Hurt E, Yoneda Y (2009) Adaptor Aly and co-adaptor Thoc5 function in the Tap-p15-mediated nuclear export of HSP70 mRNA. The EMBO Journal 28: 556-567
- ^ Ramachandran S., Tran DD., Klebba-Faerber S., Kardinal C., Whetton AD., Tamura T. An ataxia-teleaniectasia-mutated (ATM) kinase mediated response to DNA damage down-regulates the mRNA-binding potential of THOC5. RNA 17(11):1957-66, 2011
- ^ Guria A., Tran D.D.H,Ramachandran S.,Koch A.,Bounkari O.,Dutta P,Hauser H,Tamura T. Identification of mRNAs that are spliced but not exported to the cytoplasm in the absence of THOC5 in mouse embryo fibroblasts, RNA, 2011 17:00-00.
- ^ Mancini, A., Niemann-Seyde, S. C., Pankow, R., El Bounkari, O., Klebba-Färber, S., Koch, A., EJaworska, E., Spooncer, E., Gruber, A. D. , Whetton, A. D., Tamura, T. (2010) THOC5/FMIP, an mRNA export TREX complex protein, is essential for hematopoietic primitive cell survival in vivo. BMC Biology 8, 1.
- ^ Mancini, A., El Bounkari, O., Norrenbrock, A-F., Scherr, M., Schaefer, D., Eder M., Banham, A. H., Pulford, K., Lyne, L., Whetton A. D., and Tamura, T. (2007) FMIP controls the adipocyte lineage commitment of C2C12 cells by down-modulation of C/EBPalpha. Oncogene 26, 1020-1027.
- ^ Mancini A., Koch A., Whetton A.D., and Tamura T. (2004)The M-CSF receptor substrate and interacting protein FMIP is governed in its subcellular localization by protein kinase C-mediated phosphorylation and thereby potentiates M-CSF-mediated differentiation. Oncogene, 23, 6581-9.
- ^ Tamura, T., Mancini, A., Joos, H., Koch, A., Hakim, C., Dumanski, J., Weidner, K.M., and Niemann, H. (1999) FMIP, a novel Fms-interacting protein, affects granulocyte/macrophage. Oncogene, 18, 6488-6495.
- ^ Strasser K, Masuda S, Mason P, Pfannstiel J, Oppizzi M, Rodriguez-Navarro S, Rondon AG, Aguilera A, Struhl K, Reed R, Hurt E (May 2002). "TREX is a conserved complex coupling transcription with messenger RNA export". Nature. 417 (6886): 304–8. doi:10.1038/nature746. PMID 11979277. S2CID 1112194.
- ^ Xie YG, Han FY, Peyrard M, Ruttledge MH, Fransson I, DeJong P, Collins J, Dunham I, Nordenskjold M, Dumanski JP (Dec 1993). "Cloning of a novel, anonymous gene from a megabase-range YAC and cosmid contig in the neurofibromatosis type 2/meningioma region on human chromosome 22q12". Hum Mol Genet. 2 (9): 1361–8. doi:10.1093/hmg/2.9.1361. PMID 8242058.
- ^ Nagase T, Ishikawa K, Suyama M, Kikuno R, Hirosawa M, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (Jul 1999). "Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 6 (1): 63–70. doi:10.1093/dnares/6.1.63. PMID 10231032.
- ^ Carney L, Pierce A, Rijnen M, Gonzalez Sanchez MB, Hamzah HG, Zhang L, Tamura T, Whetton AD (Dec 2008). "THOC5 couples M-CSF receptor signaling to transcription factor expression". Cell Signal. 21 (2): 309–16. doi:10.1016/j.cellsig.2008.10.018. PMID 19015024.
- ^ Pierce A, Carney L, Hamza HG, Griffiths JR, Zhang L, Whetton BA, Gonzalez Sanchez MB, Tamura T, Sternberg D, Whetton AD (May 2008). "THOC5 spliceosome protein: a target for leukaemogenic tyrosine kinases that affects inositol lipid turnover". Br J Haematol. 141 (5): 641–50. doi:10.1111/j.1365-2141.2008.07090.x. PMID 18373705. S2CID 21122818.
- ^ "Entrez Gene: THOC5 THO complex 5".
Dopinska literatura[uredi | uredi izvor]
- Maruyama K, Sugano S (1994). "Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides". Gene. 138 (1–2): 171–4. doi:10.1016/0378-1119(94)90802-8. PMID 8125298.
- Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
- Suzuki Y, Yoshitomo-Nakagawa K, Maruyama K, et al. (1997). "Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA library". Gene. 200 (1–2): 149–56. doi:10.1016/S0378-1119(97)00411-3. PMID 9373149.
- Tamura T, Mancini A, Joos H, et al. (2000). "FMIP, a novel Fms-interacting protein, affects granulocyte/macrophage differentiation". Oncogene. 18 (47): 6488–95. doi:10.1038/sj.onc.1203062. PMID 10597251.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
- Mancini A, Koch A, Whetton AD, Tamura T (2004). "The M-CSF receptor substrate and interacting protein FMIP is governed in its subcellular localization by protein kinase C-mediated phosphorylation, and thereby potentiates M-CSF-mediated differentiation". Oncogene. 23 (39): 6581–9. doi:10.1038/sj.onc.1207841. PMID 15221008.
- Collins JE, Wright CL, Edwards CA, et al. (2005). "A genome annotation-driven approach to cloning the human ORFeome". Genome Biol. 5 (10): R84. doi:10.1186/gb-2004-5-10-r84. PMC 545604. PMID 15461802.
- Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
- Carroll JS, Liu XS, Brodsky AS, et al. (2005). "Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1". Cell. 122 (1): 33–43. doi:10.1016/j.cell.2005.05.008. PMID 16009131.
- Olsen JV, Blagoev B, Gnad F, et al. (2006). "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks". Cell. 127 (3): 635–48. doi:10.1016/j.cell.2006.09.026. PMID 17081983.